[Question from user]
When trying to create 3d plots with plotIndiv
, the following error occurs:
library(mixOmics)
data(multidrug)
pca.res <- pca(multidrug$ABC.trans, ncomp = 4, scale = TRUE)
plotIndiv(pca.res, style='3d')
Loading required namespace: rgl
failed with error: There is not package called ‘Shiny’
The rgl package is required for 3d plots
Can you please run the following and try again:
options("install.packages.compile.from.source"="both")
BiocManager::install('rgl', dependencies=TRUE, update = TRUE, ask = FALSE)
And if you continue to face errors run:
options("install.packages.compile.from.source"="both")
BiocManager::install('rgl', dependencies=TRUE, update = FALSE, ask = FALSE)
And if all fails, paste here the error messages plus outputs from the following code:
sessioninfo()
It works! Thanks a lot for your help!!