Hi, thanks for the great support.
I have a (hopefully) simple issue with plotting plotVar(), since the legend does not match the blocks (please see image). I hope that the plotIndiv, or even the plotDiablo gives me the right graphs. I am analysing three blocks or microRNA, RNA and proteins to distinguish two groups. From one can see that the names of the microRNAs appear as they should, but on the legend they are marked as “Prot”, while the blue dots should be RNA and not microRNA in the legend, and the grey dots should be Prot. The analysis that follows seems to be fine, also other plots such as cluster analysis.
RCC.res ← block.splsda(RCC, Y)
plotVar(RCC.res, var.names = c(FALSE, TRUE, FALSE),legend=TRUE, pch=c(16,16,16))