Hello,
I am using plotIndiv to produce an splsda plot, and the elipses are the correct colour but the data points are incorrect (orange and blue have been switched) and do not match the ellipses. I believe this is a bug as I also tried running your Case Study of sPLS-DA with SRBCT dataset and encountered the same issue (switching blue and orange colour on data points). Could you please assist?
Thanks,
Katherine