Hi mixOmics team!
First thanks for producing such a neat tool. I have a couple of questions - one specific, one general.
First, after producing the cimDiablo plot I notice that there are fewer gene ids than there are branches. Is there a way to get all the gene ids printed or exported so that I can look at it manually? I was able to export a matrix from the cimDiablo object but I don’t know that they are in the same order as the plot (below).
Second, I remain a bit unclear about how one chooses the input subsets (test.keepX) and why and how that corresponds to nrepeat in tune.block.splsda . Can you please point me to guidance on choosing the best or at least sensible test.keepX and when to use different values of nrepeat?