Biplot() missing from mixOmics package

Support
1

Dear mixOmics community,

I wanted to plot my sPLS2 output via a biplot - however, when trying to run mixOmics::biplot() I get the following error message:

Error: 'biplot' is not an exported object from 'namespace:mixOmics'

When I browse the mixOmics function repertoire via mixOmics:: I don’t get an option to choose biplot() manually (see picture). I have already uninstalled and reinstalled the mixOmics package.

image

can anyone help me out with this issue?

Thanks in advance!

Best,
Luise

2

hi @l.bel,
It should be there. Check that you have a recent version of the package (you can also pull it from GitHub).

Kim-Anh

3

I can also confirm that the biplot() function is missing from the mixOmics package. I’ve tried installing from both BioConductor as well as github. It is missing. The vignette is there, but the actual function is not.

4

@l.bel did you ever figure this out?

5

hi @padak and @l.bel,

We are missing a mixOmic developer, to be hired in the next few months so thank you for your patience.

I’ve tested in the latest version of mixOmics on bioC and it seemed to run ok, e.g.

?mixOmics::biplot
example(biplot)

Be aware of potential clashes with other biplot() functions, by calling mixOmics::biplot in your code.

Give us a bit more details on your R, BioC version and mixOmics version if you need a debug in due time.

Kim-Anh